Proteome Informatics Group > Java Proteomic Library

MS Matcher


An MS matcher is an object that handles alignment and scoring of any given pair of MS spectra.


  • the pair of MS spectra.
  • a mz tolerance.
  • alignment type support ((bpl,pl)x(bpl,pl)).
  • a model for alignment.
  • a model of algorithm for spectral comparison.
  • a scoring system defined by a scorer.