Tools

Provides applicative tools based on JPL.

QuickMod is a spectral library search based MSMS data analysis tool, designed to identify modified peptides.

QuickModViewer is simply a viewer for QuickMod results.

Deliberator generates decoy library spectra.

Liberator generates library spectra.

MzXMLReIndexer recomputes scan indices of mzXML files.

Fas2MS digests and fragments fasta proteins into annotated MS spectra.

FastaDecoy generates decoy sequences.

MassCalc computes masses for proteins or molecules.

ProteinDigester make the digestion of proteins and compute the isoelectric points and mass weights of all digested peptides.

Dig2Mz make the digestion of proteins and compute the m/z of all digested peptides that passed the charge filters.

MSDataFilter read and filter MS data.

SpectrumConverter is not yet implemented.