Amino-Acids

Overview
Molecules
Properties
- Ionizable Group
- Hydropathy Profiles

Overview

Molecules

Amino-Acid is an enumeration and a molecule.

Properties

Ionizable Group

Here are the list of all ionizable amino-acids C, D, E, H, K, R, U, Y. In polypeptide, we have to count N- and C- termini.

Hydropathy Profiles

GRAVY scores Make lighweight objects for aa properties. Resources for hydropathy scores and GRAVY:

ref 1
ref 2

I made classes to compute GRAVY scores on a sequence that depend on instances that return score for each amino-acid of a specific scoring system (by default = Kyle-Doolittle). These instances implements the JPLHydropathyScoring interface. see also JPLSequences and JPLAminoAcids utilitary classes.