### default parameters # verbose mode quiet=false # toggle the mz computation mode to AVERAGE if true average=false # set the number of fraction digits (real number format) precision=6 # if true, Electron Transfer Dissociation is the fragmentation method used in the mass spectrometer etd=false # if true, concatenate original lib with decoy lib concat-libs=false # the 'frag-mz-tol' tolerance tol=0.1 # the threshold for the distance between MS spectra (dot product) dp-threshold=0.6 # the probability to sample a non annotated peak while creating decoy spectra sampling-prob=1 # the width of intervals for non annotated peaks histograms of MS lib sampling-interval-width=100 # render MS spectra render=false