Proteome Informatics Group > Java Proteomic Library

Third-party libraries


Commons Component Dependencies

Lib NameDescription
junit.jar JUnit is a simple framework for writing and running automated tests (to execute jpl tests).

App Component Dependencies

Lib NameDescription
commons-cli.jar The commons-cli library provides an API for parsing command line options passed to programs. It's also able to print help messages detailing the options available for a command line tool.

Base Component Dependencies

Lib NameDescription
collections-generic.jar collections-generic-4.01 is a Java 5 generics-enabled version of the popular Jakarta Commons-Collections project. All appropriate classes from Commons-Collections 3.1 have been refactored to support Java generics.

Collection Component Dependencies

Lib NameDescription
commons-math.jar Commons Math is a library of lightweight, self-contained mathematics and statistics components addressing the most common problems not available in the Java programming language or Commons Lang.
commons-primitives.jar Commons Primitives provides a library of collections and utilities specially designed for use with primitive types.

Collection.Render Component Dependencies

Lib NameDescription
jfreechart.jar JFreeChart is a free 100% Java chart library that makes it easy for developers to display professional quality charts in their applications.
jcommon.jar JCommon is a Java class library that is used by JFreeChart.

Collection.Graph Component Dependencies

Lib NameDescription
jung-algorithms.jar jung-algorithms provides algorithms for Jung2 project.
jung-api.jar jung-api.jar are Graph interfaces used by the jung2 project.
jung-graph-impl.jar jung-graph-impl is a library of Graph implementations for the jung2 project.