Proteome Informatics Group > Java Proteomic Library


A Coherent Model for identification

Status: Pending - in development.

We want to create a model around experimental MS spectra, identifications, search engine, search parameters, map of every score computed by every engine, the ranking of identification, peptide and protein identified ...

We want to link all these objects together in a efficient way to query any one of them and navigate easily in the model. For example, we could be interested in searching all spectra identified from protein X or peptide Y.

We are thinking about the graph representation as a choice for modeling the data with the main advantage of mining it and navigating through it easily.

A viewer

Status: Waiting.

It could be interesting to make a viewer for the whole model. This viewer could be integrated in the future with the others not yet available (peptide/protein viewer, spectrum viewer, ms match viewer) in one.