org.expasy.jpl.commons.collection.graph
Class KPartiteGraphImpl<V,E>
java.lang.Object
edu.uci.ics.jung.graph.AbstractGraph<V,E>
edu.uci.ics.jung.graph.SparseMultigraph<V,E>
org.expasy.jpl.commons.collection.graph.KPartiteGraphImpl<V,E>
- Type Parameters:
V - vertex type.E - edge type.
- All Implemented Interfaces:
- edu.uci.ics.jung.graph.Graph<V,E>, edu.uci.ics.jung.graph.Hypergraph<V,E>, edu.uci.ics.jung.graph.KPartiteGraph<V,E>, edu.uci.ics.jung.graph.MultiGraph<V,E>, Serializable, Registrable, Node
public final class KPartiteGraphImpl<V,E>
- extends edu.uci.ics.jung.graph.SparseMultigraph<V,E>
- implements edu.uci.ics.jung.graph.KPartiteGraph<V,E>, Node
A simple implementation of KPartiteGraph.
- Version:
- 1.0
- Author:
- nikitin
- See Also:
- Serialized Form
| Fields inherited from class edu.uci.ics.jung.graph.SparseMultigraph |
directedEdges, edges, vertices |
|
Method Summary |
boolean |
addEdge(E edge,
V v1,
V v2)
|
boolean |
addEdge(E edge,
V v1,
V v2,
edu.uci.ics.jung.graph.util.EdgeType type)
|
boolean |
addVertex(V vertex)
|
int |
getEdgeCount(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
int |
getEdgeCount(org.apache.commons.collections15.Predicate<V> predicate)
|
Collection<E> |
getEdges(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
Collection<E> |
getEdges(org.apache.commons.collections15.Predicate<V> predicate)
|
String |
getId()
|
Collection<E> |
getIncidentEdges(V vertex,
Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
Collection<E> |
getIncidentEdges(V vertex,
org.apache.commons.collections15.Predicate<V> predicate)
|
Set<V> |
getNeighbors(V vertex,
Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
Collection<V> |
getNeighbors(V vertex,
org.apache.commons.collections15.Predicate<V> predicate)
|
int |
getPartitionIndex(org.apache.commons.collections15.Predicate<V> predicate)
|
int |
getPartitionIndex(V vertex)
Look for the partition of the given vertex. |
Collection<org.apache.commons.collections15.Predicate<V>> |
getPartitions()
|
V |
getVertex(String id)
|
int |
getVertexCount(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
int |
getVertexCount(org.apache.commons.collections15.Predicate<V> predicate)
|
Collection<V> |
getVertices(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
Collection<V> |
getVertices(org.apache.commons.collections15.Predicate<V> predicate)
|
Set<String> |
getVerticesId()
|
static
|
newInstance(List<org.apache.commons.collections15.Predicate<V>> partitions,
boolean subsets)
|
boolean |
removeEdge(E edge)
|
boolean |
removeVertex(V vertex)
|
void |
setId(String id)
|
void |
setPartitions(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
|
String |
toString()
|
| Methods inherited from class edu.uci.ics.jung.graph.SparseMultigraph |
addEdge, containsEdge, containsVertex, findEdge, getDefaultEdgeType, getDest, getEdgeCount, getEdgeCount, getEdges, getEdges, getEdgeType, getEndpoints, getFactory, getIncidentEdges, getIncoming_internal, getInEdges, getNeighbors, getOutEdges, getOutgoing_internal, getPredecessors, getSource, getSuccessors, getVertexCount, getVertices, isDest, isSource |
| Methods inherited from class edu.uci.ics.jung.graph.AbstractGraph |
addEdge, addEdge, addEdge, degree, findEdgeSet, getIncidentCount, getIncidentVertices, getNeighborCount, getOpposite, getPredecessorCount, getSuccessorCount, getValidatedEndpoints, inDegree, isIncident, isNeighbor, isPredecessor, isSuccessor, outDegree |
| Methods inherited from interface edu.uci.ics.jung.graph.Graph |
getDest, getEndpoints, getInEdges, getOpposite, getOutEdges, getPredecessorCount, getPredecessors, getSource, getSuccessorCount, getSuccessors, inDegree, isDest, isPredecessor, isSource, isSuccessor, outDegree |
| Methods inherited from interface edu.uci.ics.jung.graph.Hypergraph |
addEdge, addEdge, containsEdge, containsVertex, degree, findEdge, findEdgeSet, getDefaultEdgeType, getEdgeCount, getEdgeCount, getEdges, getEdges, getEdgeType, getIncidentCount, getIncidentEdges, getIncidentVertices, getNeighborCount, getNeighbors, getVertexCount, getVertices, isIncident, isNeighbor |
KPartiteGraphImpl
public KPartiteGraphImpl()
newInstance
public static <V,E> KPartiteGraphImpl<V,E> newInstance(List<org.apache.commons.collections15.Predicate<V>> partitions,
boolean subsets)
setId
public void setId(String id)
setPartitions
public void setPartitions(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getPartitionIndex
public int getPartitionIndex(org.apache.commons.collections15.Predicate<V> predicate)
getPartitionIndex
public int getPartitionIndex(V vertex)
- Look for the partition of the given vertex.
- Parameters:
vertex - the vertex to search partition index from.
- Returns:
- the partition index or -1 if not found.
getPartitions
public Collection<org.apache.commons.collections15.Predicate<V>> getPartitions()
- Specified by:
getPartitions in interface edu.uci.ics.jung.graph.KPartiteGraph<V,E>
addVertex
public boolean addVertex(V vertex)
- Specified by:
addVertex in interface edu.uci.ics.jung.graph.Hypergraph<V,E>- Overrides:
addVertex in class edu.uci.ics.jung.graph.SparseMultigraph<V,E>
removeVertex
public boolean removeVertex(V vertex)
- Specified by:
removeVertex in interface edu.uci.ics.jung.graph.Hypergraph<V,E>- Overrides:
removeVertex in class edu.uci.ics.jung.graph.SparseMultigraph<V,E>
addEdge
public boolean addEdge(E edge,
V v1,
V v2)
- Specified by:
addEdge in interface edu.uci.ics.jung.graph.Graph<V,E>- Overrides:
addEdge in class edu.uci.ics.jung.graph.AbstractGraph<V,E>
addEdge
public boolean addEdge(E edge,
V v1,
V v2,
edu.uci.ics.jung.graph.util.EdgeType type)
- Specified by:
addEdge in interface edu.uci.ics.jung.graph.Graph<V,E>- Overrides:
addEdge in class edu.uci.ics.jung.graph.AbstractGraph<V,E>
removeEdge
public boolean removeEdge(E edge)
- Specified by:
removeEdge in interface edu.uci.ics.jung.graph.Hypergraph<V,E>- Overrides:
removeEdge in class edu.uci.ics.jung.graph.SparseMultigraph<V,E>
getVerticesId
public Set<String> getVerticesId()
getVertex
public V getVertex(String id)
getVertexCount
public int getVertexCount(org.apache.commons.collections15.Predicate<V> predicate)
getVertexCount
public int getVertexCount(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getEdgeCount
public int getEdgeCount(org.apache.commons.collections15.Predicate<V> predicate)
getEdgeCount
public int getEdgeCount(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getVertices
public Collection<V> getVertices(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
- Returns:
- all vertices which satisfy the specified
node type
predicate.
- Throws:
IllegalArgumentException - if not valid predicate.
getVertices
public Collection<V> getVertices(org.apache.commons.collections15.Predicate<V> predicate)
- Specified by:
getVertices in interface edu.uci.ics.jung.graph.KPartiteGraph<V,E>
- Returns:
- all vertices which satisfy the specified
node type
predicate.
- Throws:
IllegalArgumentException - if not valid predicate.
getNeighbors
public Set<V> getNeighbors(V vertex,
Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getNeighbors
public Collection<V> getNeighbors(V vertex,
org.apache.commons.collections15.Predicate<V> predicate)
getEdges
public Collection<E> getEdges(org.apache.commons.collections15.Predicate<V> predicate)
getEdges
public Collection<E> getEdges(Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getIncidentEdges
public Collection<E> getIncidentEdges(V vertex,
Collection<org.apache.commons.collections15.Predicate<V>> predicates)
getIncidentEdges
public Collection<E> getIncidentEdges(V vertex,
org.apache.commons.collections15.Predicate<V> predicate)
getId
public final String getId()
- Specified by:
getId in interface Registrable
- Returns:
- the identifier
toString
public String toString()
- Overrides:
toString in class edu.uci.ics.jung.graph.AbstractGraph<V,E>
Copyright (c) 2012 Swiss Institute of Bioinformatics. All rights reserved.