Constant Field Values

Contents

• org.expasy.*

org.expasy.*

org.expasy.jpl.core.mol.chem.PhysicalConstants

public static final double	AVOGADROS_NUMBER	6.02214199E23
public static final double	BOLTZMANN_CONSTANT	1.3806503E-23
public static final double	ELECTRON_MASS	5.489243E-4

org.expasy.jpl.core.mol.polymer.AbstractBioPolymer<E extends Molecule>

protected static final int

DEFAULT_DOUBLE_PRECISION

2

org.expasy.jpl.core.mol.polymer.modif.BioPolymerModifContainer.Builder

public static final int	HEAD_INDEX	-2
public static final int	TAIL_INDEX	-1

org.expasy.jpl.core.mol.polymer.pept.cutter.Digester

public static final int

MISSED_CLEAVAGE_MAX

5

org.expasy.jpl.core.mol.polymer.pept.fragmenter.PeptideFragmenter

public static final int	DEFAULT_MAX_LOSS_SITES	2
protected static final int	MAX_FRAGMENT_CHARGE	5
protected static final int	MAX_FRAGMENT_MZ	2500
protected static final int	MIN_FRAGMENT_MZ	50
protected static final int	MIN_FRAGMENTABLE_LENGTH	1

org.expasy.jpl.core.mol.polymer.pept.rule.LossGrammarLexer

public static final int	AA	4
public static final int	EOF	-1
public static final int	FLOAT	5
public static final int	INT	6
public static final int	T__10	10
public static final int	T__11	11
public static final int	T__12	12
public static final int	T__13	13
public static final int	T__14	14
public static final int	T__15	15
public static final int	T__16	16
public static final int	T__8	8
public static final int	T__9	9
public static final int	WS	7

org.expasy.jpl.core.mol.polymer.pept.rule.LossGrammarParser

public static final int	AA	4
public static final int	EOF	-1
public static final int	FLOAT	5
public static final int	INT	6
public static final int	T__10	10
public static final int	T__11	11
public static final int	T__12	12
public static final int	T__13	13
public static final int	T__14	14
public static final int	T__15	15
public static final int	T__16	16
public static final int	T__8	8
public static final int	T__9	9
public static final int	WS	7

org.expasy.jpl.core.mol.polymer.pept.term.CTermManager

public static final char	FRAG_A	97
public static final char	FRAG_B	98
public static final char	FRAG_C	99

org.expasy.jpl.core.mol.polymer.pept.term.NTermManager

public static final char	FRAG_X	120
public static final char	FRAG_Y	121
public static final char	FRAG_Z	122

org.expasy.jpl.core.ms.spectrum.annot.FragmentAnnotations

public static final String

DEFAULT_PRIORITY_RULE

"charge:ascent>>ion:y>b>>loss:ascent"

org.expasy.jpl.core.ms.spectrum.annot.comp.FragmentChargeComparator

public static final String

COMPARATOR_ID

"charge"

org.expasy.jpl.core.ms.spectrum.annot.comp.FragmentModifComparator

public static final String

COMPARATOR_ID

"loss"

org.expasy.jpl.core.ms.spectrum.annot.comp.FragmentTypeComparator

public static final String

COMPARATOR_ID

"ion"

org.expasy.jpl.core.ms.spectrum.editor.intensity.OverExpressedPeakTransformer

public static final double

DEFAULT_THRESHOLD

2.0

org.expasy.jpl.core.ms.spectrum.peak.PeakImpl

public static final int	DEFAULT_CHARGE_STATE	1
public static final int	UNKNOWN_CHARGE_STATE	0

org.expasy.jpl.core.ms.spectrum.stat.MS1MS2PeakDistributions

public static final int	DEFAULT_PARTITIONS_NUMBER	10
public static final double	DEFAULT_RATIO_HIST_BIN_WIDTH	0.2