org.expasy.jpl.commons.collection.symbol.seq
Class MotifMatcher.Iterator

java.lang.Object
  org.expasy.jpl.commons.collection.ExtraIterable.AbstractExtraIterator<Integer>
      org.expasy.jpl.commons.collection.IndexIterable.Iterator
          org.expasy.jpl.commons.collection.symbol.seq.AbstractSequencePositioner.Iterator
              org.expasy.jpl.commons.collection.symbol.seq.MotifMatcher.Iterator

All Implemented Interfaces:

Iterator<Integer>

Enclosing class:

MotifMatcher<T>

public class MotifMatcher.Iterator
extends AbstractSequencePositioner.Iterator

Inner iterator over pattern matching sequence positions.

Field Summary

protected Matcher

matcher

Fields inherited from class org.expasy.jpl.commons.collection.symbol.seq.AbstractSequencePositioner.Iterator

nextPosition

Constructor Summary

MotifMatcher.Iterator()

Method Summary

boolean

foundNextPosition() This function will have to set nextPosition to its value and will return true if a valid position is found otherwise false.

Methods inherited from class org.expasy.jpl.commons.collection.symbol.seq.AbstractSequencePositioner.Iterator

hasNext, next

Methods inherited from class org.expasy.jpl.commons.collection.ExtraIterable.AbstractExtraIterator

nextToList, nextToList, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

matcher

protected Matcher matcher

Constructor Detail

MotifMatcher.Iterator

public MotifMatcher.Iterator()

Method Detail

foundNextPosition

public boolean foundNextPosition()

Description copied from class: AbstractSequencePositioner.Iterator

This function will have to set nextPosition to its value and will return true if a valid position is found otherwise false.

Specified by:

foundNextPosition in class AbstractSequencePositioner.Iterator