Package org.expasy.jpl.commons.collection.symbol.seq

Provides generic symbol sequence and associated tools.

See:
Description

Interface Summary

Sequence<T>	This interface is the generic version of CharSequence for any object.
SequenceIterable<T>	This interface allows the manipulation of iterator over T-sequence indices.
SequenceMerger<T>	All concrete subclasses of this interface will have to provides implementations for the processing of concatenation and access to the merged symbol sequence.
SymbolSequence<T>	The SymbolSequence interface should be implemented by any concrete class that deals with sequence of symbols.

Class Summary

AbstractSequencePositioner<T>	This class provides a skeletal implementation of the PositionIterable interface, to minimize the effort required to implement this interface.
MotifMatcher<T>	This class allows to search a regular expression pattern all over a symbol sequence and store positions in its inner Iterator.
SequenceSymbolCounter<T>	This object calculates the number of symbols in SymbolSequence[s].
SequenceSymbolMergerImpl<T>	This class simply concatenates SymbolSequences in a new SymbolSequence.
SymbolSequenceImpl<E>	A sequence of symbol letters defined by an alphabet.
SymbolSequenceImpl.Builder<E>	This builder builds an instance of JPLAASequence given a numerous number of possible parameters.

Exception Summary

SequenceOutOfBoundsException

Package org.expasy.jpl.commons.collection.symbol.seq Description

Provides generic symbol sequence and associated tools.