org.expasy.jpl.commons.collection.symbol.seq
Class SequenceSymbolCounter<T>

java.lang.Object
  org.expasy.jpl.commons.collection.symbol.seq.SequenceSymbolCounter<T>

public final class SequenceSymbolCounter<T>
extends Object

This object calculates the number of symbols in SymbolSequence[s].

Version:

1.0

Author:

nikitin

Method Summary

List<Integer>	getIndices(Set<Symbol<T>> symbols)
List<Integer>	getIndices(Symbol<T> symbol) Return the list of indices of specified symbol
int	getSymbolNumber()
int	getSymbolNumber(Set<Symbol<T>> symbols)
int	getSymbolNumber(Symbol<T> symbol) Return the number of occurrences for the specified symbol.
Set<Symbol<T>>	getSymbols()
boolean	hasSymbol(Symbol<T> symbol)
static <T> SequenceSymbolCounter<T>	newInstance()
void	process(List<SymbolSequence<T>> sequences) Compute all the occurrences of symbol for a list of symbol sequences
void	process(SymbolSequence<T>... sequences)
void	process(SymbolSequence<T> sequence) Compute all the occurrences of a sequence of symbols.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

newInstance

public static <T> SequenceSymbolCounter<T> newInstance()

process

public void process(SymbolSequence<T> sequence)

Compute all the occurrences of a sequence of symbols.

process

public void process(List<SymbolSequence<T>> sequences)

Compute all the occurrences of symbol for a list of symbol sequences

process

public void process(SymbolSequence<T>... sequences)

getIndices

public final List<Integer> getIndices(Symbol<T> symbol)

Return the list of indices of specified symbol

Parameters:

symbol - the symbol to look for positions on.

Returns:

a list of indices for aaByte.

getIndices

public final List<Integer> getIndices(Set<Symbol<T>> symbols)

getSymbolNumber

public int getSymbolNumber()

getSymbolNumber

public final int getSymbolNumber(Set<Symbol<T>> symbols)

getSymbolNumber

public final int getSymbolNumber(Symbol<T> symbol)

Return the number of occurrences for the specified symbol.

Parameters:

symbol - the symbol to look for occurrences on.

Returns:

a number of occurrence for the given symbol.

getSymbols

public Set<Symbol<T>> getSymbols()

hasSymbol

public final boolean hasSymbol(Symbol<T> symbol)

toString

public String toString()

Overrides:

toString in class Object