org.expasy.jpl.commons.collection.symbol.seq
Interface SequenceIterable<T>

All Superinterfaces:

ExtraIterable<Integer>, IndexIterable, Iterable<Integer>

All Known Implementing Classes:

AbstractSequencePositioner, MotifMatcher

public interface SequenceIterable<T>
extends IndexIterable

This interface allows the manipulation of iterator over T-sequence indices.

Version:

1.0

Author:

nikitin

Nested Class Summary

Nested classes/interfaces inherited from interface org.expasy.jpl.commons.collection.IndexIterable

IndexIterable.Iterator

Nested classes/interfaces inherited from interface org.expasy.jpl.commons.collection.ExtraIterable

ExtraIterable.AbstractExtraIterator<T>

Method Summary

int	getNumberOfSites() get number of positions
IndexIterable.Iterator	iterator(SymbolSequence<T> sequence) coupling sequence with iterator
void	setSequence(SymbolSequence<T> sequence) sequence over which positions will be retrieved.

Methods inherited from interface org.expasy.jpl.commons.collection.IndexIterable

iterator

Method Detail

setSequence

void setSequence(SymbolSequence<T> sequence)

sequence over which positions will be retrieved.

getNumberOfSites

int getNumberOfSites()

get number of positions

iterator

IndexIterable.Iterator iterator(SymbolSequence<T> sequence)

coupling sequence with iterator