org.expasy.jpl.commons.collection.symbol.seq
Class SymbolSequenceImpl.Builder<E>

java.lang.Object
  org.expasy.jpl.commons.collection.symbol.seq.SymbolSequenceImpl.Builder<E>

All Implemented Interfaces:

InstanceBuilder<SymbolSequenceImpl<E>>

Enclosing class:

SymbolSequenceImpl<E>

public static class SymbolSequenceImpl.Builder<E>
extends Object
implements InstanceBuilder<SymbolSequenceImpl<E>>

This builder builds an instance of JPLAASequence given a numerous number of possible parameters.

Author:

nikitin

Constructor Summary

SymbolSequenceImpl.Builder(String sequenceString, Symbol.SymbolType<E> type)
The main builder constructor.

SymbolSequenceImpl.Builder(SymbolSequenceImpl<E> sequence)
An alternative builder constructor.

Method Summary

boolean	allowAmbiguity()
SymbolSequenceImpl.Builder<E>	ambiguityEnabled()
SymbolSequenceImpl<E>	build() Build an instance of T-type object.
SymbolSequenceImpl.Builder<E>	from(int from)
int	getSeqLen()
SymbolSequenceImpl.Builder<E>	to(int to)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SymbolSequenceImpl.Builder

public SymbolSequenceImpl.Builder(String sequenceString,
                                  Symbol.SymbolType<E> type)

The main builder constructor.

Parameters:

sequenceString - the sequence string representation

SymbolSequenceImpl.Builder

public SymbolSequenceImpl.Builder(SymbolSequenceImpl<E> sequence)

An alternative builder constructor.

Parameters:

sequence - the sequence to copy.

Method Detail

ambiguityEnabled

public SymbolSequenceImpl.Builder<E> ambiguityEnabled()

from

public SymbolSequenceImpl.Builder<E> from(int from)

to

public SymbolSequenceImpl.Builder<E> to(int to)

allowAmbiguity

public boolean allowAmbiguity()

getSeqLen

public int getSeqLen()

build

public SymbolSequenceImpl<E> build()
                            throws BuilderException

Description copied from interface: InstanceBuilder

Build an instance of T-type object.

Specified by:

build in interface InstanceBuilder<SymbolSequenceImpl<E>>

Returns:

an instance of T.

Throws:

BuilderException - - if conditions to build T are not satisfied.