Uses of Package
org.expasy.jpl.commons.collection.symbol.seq

Packages that use org.expasy.jpl.commons.collection.symbol.seq

org.expasy.jpl.commons.collection.symbol.seq

Provides generic symbol sequence and associated tools.

Classes in org.expasy.jpl.commons.collection.symbol.seq used by org.expasy.jpl.commons.collection.symbol.seq

AbstractSequencePositioner
This class provides a skeletal implementation of the PositionIterable interface, to minimize the effort required to implement this interface.

AbstractSequencePositioner.Iterator
This inner class provides implementations for next() and hasNext() needed from Iterator interface.

MotifMatcher
This class allows to search a regular expression pattern all over a symbol sequence and store positions in its inner Iterator.

MotifMatcher.Iterator
Inner iterator over pattern matching sequence positions.

Sequence
This interface is the generic version of CharSequence for any object.

SequenceIterable
This interface allows the manipulation of iterator over T-sequence indices.

SequenceMerger
All concrete subclasses of this interface will have to provides implementations for the processing of concatenation and access to the merged symbol sequence.

SequenceSymbolCounter
This object calculates the number of symbols in SymbolSequence[s].

SequenceSymbolMergerImpl
This class simply concatenates SymbolSequences in a new SymbolSequence.

SymbolSequence
The SymbolSequence interface should be implemented by any concrete class that deals with sequence of symbols.

SymbolSequenceImpl
A sequence of symbol letters defined by an alphabet.

SymbolSequenceImpl.Builder
This builder builds an instance of JPLAASequence given a numerous number of possible parameters.