Third-party libraries
Overview
This package provides readers and writers for Mass Spectrometry and polymers.
JPL-IO Dependency
| Lib Name | Description |
|---|---|
| jpl-core.jar [*] | The JPL core library. |
| jpl-commons-*.jar [*] | The JPL commons (base and collection) libraries. |
| commons-logging.jar | Wrapper around a variety of logging API implementations. |
| junit.jar | JUnit is a simple framework for writing and running automated tests (to execute jpl tests). |
Note
[*] See JPL Components dependencies.
Java Dependency for JPL-IO-HDP (hadoop-based)
| Lib Name | Description |
|---|---|
| hbase.jar | HBase is the Hadoop database. We use it to access random and realtime read/write access to our Big Data. |
| hadoop-common.jar | Hadoop Common is a set of utilities that support the Hadoop subprojects. Hadoop Common includes FileSystem, RPC, and serialization libraries. |
| hadoop-hdfs.jar | Hadoop Distributed File System (HDFS) is the primary storage system used by Hadoop applications. HDFS creates multiple replicas of data blocks and distributes them on compute nodes throughout a cluster to enable reliable, extremely rapid computations. |
Java Dependencies Libs for mzXML
| Lib Name | Description |
|---|---|
| jrap-ext.jar | A library to parse mzXML files (based on xerces below). |
| xercesImpl.jar | A Java processor for parsing, validating, serializing and manipulating XML. |
Java Dependency for mzML
Java Dependencies Libs for jmzML
| Lib Name | Description |
|---|---|
| jaxb-api.jar, jaxb-impl.jar & jaxb-xjc.jar | JAXB for Java Architecture for XML Binding is a framework for processing XML documents. |
| stax-api.jar | The Streaming API for XML (StAX). |
| xxindex | The XPath-based XML indexer. |
| cpdetector.jar | cpdetector is a code page - detector |
| activation.jar | The JavaBeans Activation Framework by Sun |
| commons-io.jar | commons io provides a collection of I/O utilities. |
| log4j.jar | log4j provides logging services designed for Java. |
