Hierarchy For All Packages

Package Hierarchies:

org.expasy.jpl.commons.app, org.expasy.jpl.commons.base, org.expasy.jpl.commons.base.builder, org.expasy.jpl.commons.base.cond, org.expasy.jpl.commons.base.cond.operator, org.expasy.jpl.commons.base.cond.operator.api, org.expasy.jpl.commons.base.cond.operator.impl, org.expasy.jpl.commons.base.io, org.expasy.jpl.commons.base.math, org.expasy.jpl.commons.base.mem, org.expasy.jpl.commons.base.process, org.expasy.jpl.commons.base.record, org.expasy.jpl.commons.base.render, org.expasy.jpl.commons.base.string, org.expasy.jpl.commons.base.task, org.expasy.jpl.commons.collection, org.expasy.jpl.commons.collection.graph, org.expasy.jpl.commons.collection.render, org.expasy.jpl.commons.collection.sorter, org.expasy.jpl.commons.collection.stat, org.expasy.jpl.commons.collection.symbol, org.expasy.jpl.commons.collection.symbol.seq, org.expasy.jpl.commons.collection.tree

Class Hierarchy

• java.lang.Object
  • org.expasy.jpl.commons.collection.render.Abstract2DChartRenderer<T> (implements org.expasy.jpl.commons.base.render.ChartRenderer)
    • org.expasy.jpl.commons.collection.render.BarCodeRenderer<T> (implements org.expasy.jpl.commons.base.render.BarChartRenderer)
    • org.expasy.jpl.commons.collection.render.StatisticalSerieRenderer<T> (implements org.expasy.jpl.commons.base.render.BarChartRenderer)
  • org.expasy.jpl.commons.app.AbstractApplicationParameters
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • org.expasy.jpl.commons.collection.PartitionList<T>
  • org.expasy.jpl.commons.collection.symbol.AbstractDataSymbolRegister<T> (implements org.expasy.jpl.commons.collection.symbol.DataSymbolRegister<T>)
  • org.expasy.jpl.commons.base.AbstractDecorator<T> (implements java.io.Serializable)
    • org.expasy.jpl.commons.collection.sorter.ComparatorInverter<T> (implements java.util.Comparator<T>)
  • org.expasy.jpl.commons.collection.sorter.AbstractDoublesArrayIndexComparator (implements org.expasy.jpl.commons.collection.sorter.ArrayIndexComparator)
  • edu.uci.ics.jung.graph.AbstractGraph<V,E> (implements edu.uci.ics.jung.graph.Graph<V,E>, java.io.Serializable)
    • edu.uci.ics.jung.graph.SparseMultigraph<V,E> (implements edu.uci.ics.jung.graph.MultiGraph<V,E>)
      • org.expasy.jpl.commons.collection.graph.KPartiteGraphImpl<V,E> (implements edu.uci.ics.jung.graph.KPartiteGraph<V,E>, org.expasy.jpl.commons.collection.graph.Node)
  • org.expasy.jpl.commons.collection.sorter.AbstractIntsArrayIndexComparator (implements org.expasy.jpl.commons.collection.sorter.ArrayIndexComparator)
  • org.expasy.jpl.commons.collection.sorter.AbstractListIndexComparator<T> (implements org.expasy.jpl.commons.collection.sorter.ArrayIndexComparator)
  • org.expasy.jpl.commons.collection.sorter.AbstractObjectsArrayIndexComparator<T> (implements org.expasy.jpl.commons.collection.sorter.ArrayIndexComparator)
  • org.expasy.jpl.commons.base.cond.operator.api.AbstractOperator<U,V> (implements org.expasy.jpl.commons.base.cond.operator.api.Operator<U,V>)
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorAnd
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorApproxEquals<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorBelongs<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorBelongsToDoD<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorContains<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorEquals<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorGreaterThan<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorInter<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorLowerThan<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorMulti<T>
    • org.expasy.jpl.commons.base.cond.operator.impl.OperatorOr
  • org.expasy.jpl.commons.collection.symbol.seq.AbstractSequencePositioner<T> (implements org.expasy.jpl.commons.collection.symbol.seq.SequenceIterable<T>)
    • org.expasy.jpl.commons.collection.symbol.seq.MotifMatcher<T>
  • org.expasy.jpl.commons.collection.sorter.AbstractStringBasedComparator<T,V> (implements java.util.Comparator<T>, org.expasy.jpl.commons.base.builder.StringBasedFactory<T>)
    • org.expasy.jpl.commons.collection.sorter.NumberStringBasedComparator<T> (implements java.util.Comparator<T>, org.expasy.jpl.commons.base.builder.StringBasedFactory<T>)
    • org.expasy.jpl.commons.collection.sorter.StringStringBasedComparator<T> (implements java.util.Comparator<T>, org.expasy.jpl.commons.base.builder.StringBasedFactory<T>)
  • org.expasy.jpl.commons.collection.symbol.AbstractSymbol<T> (implements java.io.Serializable, org.expasy.jpl.commons.collection.symbol.Symbol<T>)
  • org.expasy.jpl.commons.collection.symbol.AbstractSymbolType<T> (implements org.expasy.jpl.commons.collection.symbol.Symbol.SymbolType<T>)
  • org.expasy.jpl.commons.collection.symbol.AlphabetImpl<T> (implements org.expasy.jpl.commons.collection.symbol.Alphabet<T>, org.expasy.jpl.commons.collection.symbol.AlphabetView<T>)
  • org.expasy.jpl.commons.collection.sorter.ArrayIndexSorter
  • org.expasy.jpl.commons.collection.sorter.ArraySorterImpl<T> (implements org.expasy.jpl.commons.collection.sorter.ArraySorter<T>)
  • org.expasy.jpl.commons.collection.BarCode
  • org.expasy.jpl.commons.collection.sorter.ChainedComparator<T> (implements java.util.Comparator<T>)
  • org.expasy.jpl.commons.collection.sorter.ChainedStringCodedComparator<T> (implements java.util.Comparator<T>, org.expasy.jpl.commons.base.builder.StringBasedFactory<T>)
  • org.expasy.jpl.commons.collection.CollectionUtils
  • org.expasy.jpl.commons.base.math.CombinationFactory (implements org.apache.commons.collections15.Transformer<I,O>)
  • org.expasy.jpl.commons.base.cond.ConditionImpl<T,V> (implements org.expasy.jpl.commons.base.cond.Condition<T>)
  • org.expasy.jpl.commons.base.cond.ConditionImpl.Builder<T,V> (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.base.cond.ConditionInterpreter<T> (implements org.expasy.jpl.commons.base.builder.Interpreter<T>)
  • org.expasy.jpl.commons.base.CounterImpl (implements org.expasy.jpl.commons.base.Counter, org.expasy.jpl.commons.base.ExplicitlyCloneable, org.expasy.jpl.commons.base.Resetable, java.io.Serializable)
  • org.expasy.jpl.commons.base.record.DataTable (implements java.lang.Iterable<T>, java.io.Serializable)
  • org.expasy.jpl.commons.base.record.DataTable.Record (implements org.expasy.jpl.commons.base.record.DataRecord, java.io.Serializable)
  • org.expasy.jpl.commons.base.record.DataTableFactory (implements java.io.Serializable)
  • org.expasy.jpl.commons.base.record.DataTableFactory.Builder (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.base.record.DataTableFactory.TypeManager
  • org.expasy.jpl.commons.base.io.DecimalFormatFactory
  • org.expasy.jpl.commons.base.math.DoubleComparator (implements java.util.Comparator<T>)
  • org.expasy.jpl.commons.collection.ExtraIterable.AbstractExtraIterator<T> (implements java.util.Iterator<E>)
    • org.expasy.jpl.commons.collection.IndexIterable.Iterator
      • org.expasy.jpl.commons.collection.symbol.seq.AbstractSequencePositioner.Iterator
        • org.expasy.jpl.commons.collection.symbol.seq.MotifMatcher.Iterator
  • org.expasy.jpl.commons.base.math.FactorialCalculator
  • java.io.File (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.expasy.jpl.commons.base.io.JPLFile
  • org.expasy.jpl.commons.base.io.FileFinder
  • org.expasy.jpl.commons.base.io.FilenameValidator
  • org.expasy.jpl.commons.base.GenericProperties<T>
  • org.expasy.jpl.commons.collection.graph.GraphCloner<V,E>
  • org.expasy.jpl.commons.collection.graph.GraphCollapser<V,E>
    • org.expasy.jpl.commons.collection.graph.KPartiteGraphImpl.Collapser<V,E>
  • org.expasy.jpl.commons.collection.graph.GraphExporter<V,E>
  • org.expasy.jpl.commons.collection.graph.GraphExporter.Builder<V,E> (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.graph.GraphExporter.DotTransformer<V,E> (implements org.apache.commons.collections15.Transformer<I,O>)
  • org.expasy.jpl.commons.collection.graph.GraphExporter.ObjectComparator (implements java.util.Comparator<T>)
  • org.expasy.jpl.commons.collection.graph.GraphFilterer<V,E>
  • org.expasy.jpl.commons.collection.graph.GraphPredicate
  • org.expasy.jpl.commons.collection.graph.GraphPredicate.GraphInstancePredicate<T> (implements org.apache.commons.collections15.Predicate<T>)
  • org.expasy.jpl.commons.collection.graph.GraphPredicate.ValuePredicate<T> (implements org.apache.commons.collections15.Predicate<T>)
  • org.expasy.jpl.commons.collection.graph.GraphPredicate.VertexPatternPredicate<T> (implements org.apache.commons.collections15.Predicate<T>)
  • org.expasy.jpl.commons.collection.stat.HistogramDataSet
  • org.expasy.jpl.commons.collection.stat.HistogramDataSet.Builder (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.stat.HistogramDataSetExporter
  • org.expasy.jpl.commons.collection.render.HistogramDataSetRenderer (implements org.expasy.jpl.commons.base.render.ChartRenderer)
  • org.expasy.jpl.commons.collection.IntegerSequence
  • org.expasy.jpl.commons.collection.IntegerSequence.Builder (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.IntegerSequenceWithGap
  • org.expasy.jpl.commons.app.InteractiveInputScannerImpl (implements org.expasy.jpl.commons.app.InteractiveInputScanner)
  • org.expasy.jpl.commons.app.InteractiveInputScannerImpl.Builder (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.Interval (implements org.expasy.jpl.commons.base.DomainOfDefinition<T>, org.expasy.jpl.commons.base.ExplicitlyCloneable)
  • org.expasy.jpl.commons.collection.Interval.Builder (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.Interval.IntervalComparator (implements java.util.Comparator<T>)
  • org.expasy.jpl.commons.collection.Interval.OverlapFinder
  • org.expasy.jpl.commons.base.task.JProgressBarAdapter (implements org.expasy.jpl.commons.base.task.ProgressBar)
  • org.expasy.jpl.commons.collection.graph.KPartiteGraphImpl.PredicateImpl<T> (implements org.apache.commons.collections15.Predicate<T>)
  • org.expasy.jpl.commons.base.mem.MemoryAgent
  • org.expasy.jpl.commons.base.math.MixedRadixNtupleFactory (implements org.apache.commons.collections15.Transformer<I,O>)
  • java.lang.Number (implements java.io.Serializable)
    • org.expasy.jpl.commons.collection.stat.LaplaceGaussRandomVar
    • org.expasy.jpl.commons.collection.stat.StatisticalCategory
  • org.expasy.jpl.commons.base.mem.ObjectSizeEstimator
  • org.expasy.jpl.commons.base.cond.operator.OperatorManager
  • org.expasy.jpl.commons.collection.PoolImpl<T> (implements org.expasy.jpl.commons.collection.Pool<T>)
  • org.expasy.jpl.commons.collection.PrimitiveArrayUtils
  • org.expasy.jpl.commons.collection.stat.ProbDistLGUtils
  • org.expasy.jpl.commons.base.record.RecordsCount<T> (implements org.expasy.jpl.commons.base.record.CountableRecords<T>, org.expasy.jpl.commons.base.ExplicitlyCloneable, org.expasy.jpl.commons.base.Resetable)
  • org.expasy.jpl.commons.base.record.RecordsCountUtils
  • org.expasy.jpl.commons.base.io.RegexConstants
  • org.expasy.jpl.commons.base.mem.RunTimeMemoryEstimator
  • org.expasy.jpl.commons.collection.symbol.seq.SequenceSymbolCounter<T>
  • org.expasy.jpl.commons.collection.symbol.seq.SequenceSymbolMergerImpl<T> (implements org.expasy.jpl.commons.collection.symbol.seq.SequenceMerger<T>)
  • org.expasy.jpl.commons.base.process.SequenceTransformer<T> (implements org.apache.commons.collections15.Transformer<I,O>)
  • org.expasy.jpl.commons.base.io.Serializer<T>
  • org.expasy.jpl.commons.collection.stat.StatisticalSerieDiscreteDataSet (implements org.expasy.jpl.commons.collection.stat.StatisticalSerie<T>)
  • org.expasy.jpl.commons.base.math.StatScoreCalculator
  • org.expasy.jpl.commons.base.math.StraightLineFitter
  • org.expasy.jpl.commons.collection.sorter.StringCodedComparatorFactory<T> (implements org.expasy.jpl.commons.base.builder.StringBasedFactory<T>)
  • org.expasy.jpl.commons.base.string.StringConverters (implements java.io.Serializable)
  • org.expasy.jpl.commons.base.string.StringConverters.StringConverter<T> (implements java.io.Serializable, org.apache.commons.collections15.Transformer<I,O>)
  • org.expasy.jpl.commons.base.string.StringUtils
  • org.expasy.jpl.commons.collection.symbol.seq.SymbolSequenceImpl<E> (implements java.io.Serializable, org.expasy.jpl.commons.collection.symbol.seq.SymbolSequence<T>)
  • org.expasy.jpl.commons.collection.symbol.seq.SymbolSequenceImpl.Builder<E> (implements org.expasy.jpl.commons.base.builder.InstanceBuilder<T>)
  • org.expasy.jpl.commons.collection.symbol.SymbolTable<T>
  • org.expasy.jpl.commons.base.io.TabFileReader (implements org.expasy.jpl.commons.base.io.Parser<T>)
  • org.expasy.jpl.commons.base.io.TabFileWriter
  • org.expasy.jpl.commons.base.task.TerminalProgressBar (implements org.expasy.jpl.commons.base.task.ProgressBar)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.expasy.jpl.commons.collection.stat.HistogramDataSet.OutOfUpperBoundException
      • org.expasy.jpl.commons.base.render.ImageRenderingException
      • org.expasy.jpl.commons.base.math.MixedRadixNtupleFactory.BadRadixException
      • org.expasy.jpl.commons.base.cond.operator.OperatorManager.InvalidOperatorException
      • org.expasy.jpl.commons.base.process.ProcessException
      • java.lang.RuntimeException
        • org.expasy.jpl.commons.collection.symbol.AlphabetException
        • org.expasy.jpl.commons.base.builder.BuilderException
        • org.expasy.jpl.commons.base.cond.ConditionImpl.ConditionRuntimeException
        • org.expasy.jpl.commons.base.EditorException
        • java.lang.IndexOutOfBoundsException
          • java.lang.ArrayIndexOutOfBoundsException
            • org.expasy.jpl.commons.collection.symbol.seq.SequenceOutOfBoundsException
        • org.expasy.jpl.commons.collection.Interval.IntervalOverlapException
        • org.expasy.jpl.commons.base.cond.operator.OperatorManager.InvalidOperatorRTException
        • org.expasy.jpl.commons.collection.Pool.KeyAlreadyExistException
        • org.expasy.jpl.commons.collection.Pool.ObjectAlreadyExistException
        • org.expasy.jpl.commons.collection.symbol.SymbolNotFoundException
      • org.expasy.jpl.commons.base.TypedDatum.IllegalDataAssignmentException
  • org.expasy.jpl.commons.collection.tree.TreeNodeImpl<T> (implements org.expasy.jpl.commons.collection.tree.TreeNode<T>)
  • org.expasy.jpl.commons.collection.tree.TreeViewImpl<T> (implements org.expasy.jpl.commons.collection.tree.TreeView<T>)
  • org.expasy.jpl.commons.base.TypedDataContainer
  • org.expasy.jpl.commons.base.TypedDatum<T>
  • org.expasy.jpl.commons.base.TypedDatum.Type<T> (implements org.apache.commons.collections15.Transformer<I,O>)
  • org.expasy.jpl.commons.base.process.U2VSequenceTransformer<U,V> (implements org.apache.commons.collections15.Transformer<I,O>)

Interface Hierarchy

• org.expasy.jpl.commons.collection.symbol.AlphabetView<T>
  • org.expasy.jpl.commons.collection.symbol.Alphabet<T> (also extends java.io.Serializable)
  • org.expasy.jpl.commons.collection.symbol.DataSymbolRegister<T> (also extends java.io.Serializable)
• org.expasy.jpl.commons.collection.sorter.ArraySorter<T>
• org.expasy.jpl.commons.base.render.ChartRenderer
  • org.expasy.jpl.commons.base.render.BarChartRenderer
• java.lang.Cloneable
  • org.expasy.jpl.commons.base.ExplicitlyCloneable
• java.util.Comparator<T>
  • org.expasy.jpl.commons.collection.sorter.ArrayIndexComparator
• org.expasy.jpl.commons.base.cond.ConditionBasedFilterReady<T>
• org.expasy.jpl.commons.base.Counter
• org.expasy.jpl.commons.base.record.DataRecord
• org.expasy.jpl.commons.base.record.DataTableFactory.TypeManager.IType
• org.expasy.jpl.commons.base.DomainOfDefinition<T>
• org.expasy.jpl.commons.base.Editor<T>
• org.expasy.jpl.commons.base.Evaluable
• org.expasy.jpl.commons.base.builder.InstanceBuilder<T>
• org.expasy.jpl.commons.app.InteractiveInputScanner
• org.expasy.jpl.commons.base.builder.Interpreter<T>
• java.lang.Iterable<T>
  • org.expasy.jpl.commons.collection.ExtraIterable<T>
    • org.expasy.jpl.commons.collection.IndexIterable
      • org.expasy.jpl.commons.collection.symbol.seq.SequenceIterable<T>
    • org.expasy.jpl.commons.collection.symbol.seq.SequenceIterable<T>
  • org.expasy.jpl.commons.collection.IndexIterable
    • org.expasy.jpl.commons.collection.symbol.seq.SequenceIterable<T>
  • org.expasy.jpl.commons.collection.symbol.seq.SequenceIterable<T>
• org.expasy.jpl.commons.app.JPLTerminalApplication
• org.expasy.jpl.commons.collection.Mappable
  • org.expasy.jpl.commons.collection.Cachable (also extends org.expasy.jpl.commons.base.Registrable)
• org.expasy.jpl.commons.base.mem.MemoryEstimatorReady
• org.expasy.jpl.commons.base.cond.operator.api.Operator<U,V>
• org.expasy.jpl.commons.base.io.Parser<T>
  • org.expasy.jpl.commons.base.io.BuilderBasedParser<CT,BT>
• org.expasy.jpl.commons.collection.PartitionList.IndexingAlgo<T>
• org.expasy.jpl.commons.collection.PartitionList.LastIndexingAlgo<T>
• org.expasy.jpl.commons.base.Pluggable<T>
  • org.expasy.jpl.commons.base.task.ProgressBarReady
• org.expasy.jpl.commons.collection.stat.Ponderable
• org.apache.commons.collections15.Predicate<T>
  • org.expasy.jpl.commons.base.cond.Condition<T>
• org.expasy.jpl.commons.base.process.Processor<T>
• org.expasy.jpl.commons.base.task.ProgressBar
• org.expasy.jpl.commons.collection.Register<T>
  • org.expasy.jpl.commons.collection.Pool<T>
• org.expasy.jpl.commons.base.Registrable
  • org.expasy.jpl.commons.collection.Cachable (also extends org.expasy.jpl.commons.collection.Mappable)
  • org.expasy.jpl.commons.collection.graph.Edge
  • org.expasy.jpl.commons.collection.graph.Node
  • org.expasy.jpl.commons.base.SerialIdentifiable (also extends java.io.Serializable)
• org.expasy.jpl.commons.base.Resetable
• org.expasy.jpl.commons.collection.symbol.seq.Sequence<T>
  • org.expasy.jpl.commons.collection.symbol.seq.SymbolSequence<T>
• org.expasy.jpl.commons.collection.symbol.seq.SequenceMerger<T>
• java.io.Serializable
  • org.expasy.jpl.commons.collection.symbol.Alphabet<T> (also extends org.expasy.jpl.commons.collection.symbol.AlphabetView<T>)
  • org.expasy.jpl.commons.base.record.CountableRecords<T>
  • org.expasy.jpl.commons.collection.symbol.DataSymbolRegister<T> (also extends org.expasy.jpl.commons.collection.symbol.AlphabetView<T>)
  • org.expasy.jpl.commons.base.SerialIdentifiable (also extends org.expasy.jpl.commons.base.Registrable)
  • org.expasy.jpl.commons.collection.symbol.Symbol.SymbolType<T>
  • org.expasy.jpl.commons.collection.tree.TreeNode<T> (also extends org.expasy.jpl.commons.collection.tree.TreeView<T>)
• org.expasy.jpl.commons.collection.stat.StatisticalSerie<T>
• org.expasy.jpl.commons.base.builder.StringBasedFactory<T>
• org.expasy.jpl.commons.collection.symbol.Symbol<T>
• org.expasy.jpl.commons.collection.tree.TreeView<T>
  • org.expasy.jpl.commons.collection.tree.TreeNode<T> (also extends java.io.Serializable)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.expasy.jpl.commons.base.record.RecordsCount.Operator
    • org.expasy.jpl.commons.base.render.ImageFormat
    • org.expasy.jpl.commons.collection.sorter.AbstractStringBasedComparator.OrderType